PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG309400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 509aa    MW: 56088.5 Da    PI: 4.4822
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG309400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.72.1e-34761682103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++++++l+ +isw + gnsfvv+d+++fa++vLp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +++k
  Pavir.1KG309400.1.p  76 FLSKTYDLVSEPALDVIISWGAAGNSFVVWDPSTFARDVLPHNFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRDSK 156
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r++s+
  Pavir.1KG309400.1.p 157 HLLKRIVRRRSS 168
                          ********9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.98E-3372165IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.0E-3772165IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5472165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-167699IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3076165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-16114126IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340115139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-16127139IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MDRADAGGSS SISDPDAPYS AAAALLLEPK LEDEELPLRQ LASPGPFVPL DQLMPPAAEP  60
PRPLEALLQG PQLPPFLSKT YDLVSEPALD VIISWGAAGN SFVVWDPSTF ARDVLPHNFK  120
HNNFSSFVRQ LNTYGFRKVH ADRWEFAHED FLRDSKHLLK RIVRRRSSPT QQSSIQPGLS  180
SGESSLDPEL HTLRREKNAL LEEVARLKQE HRQTIEQMST LNHRLESAED RQKQMVSFLA  240
KLLQNPSFVR QLKLHREQKE IDSIRVKRKF LKHVPHSSIE SGESSSQHGG DSGSQFPASS  300
PMDTSAHDDI AELQNFLLED DDLNFGMDPD NIGLDRVEQP DDIGVLVQSF DTQEELELGS  360
GAQLLEMPPA SGPLGQDPTI GRSKGKSVLC PGLDATSSEA SYLGSISDTM GALSGTMLGT  420
ASTMMDADEE QMWGVDASAP LQSTCSGSSQ QTFSSLASDP YLMDIANKPD KFWDLDFQTL  480
EQGDLQLDKC AIDDPTLQQQ QQRNMKDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-246816811123Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.194880.0callus| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952622.10.0PREDICTED: heat stress transcription factor A-3-like
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLK3YRP90.0K3YRP9_SETIT; Uncharacterized protein
STRINGSi016943m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-70heat shock transcription factor A3